Index A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z A accessed_at (cryosparc.spec.ProjectLastAccessed attribute) add_fields() (cryosparc.dataset.Dataset method) add_input() (cryosparc.job.ExternalJob method) add_output() (cryosparc.job.ExternalJob method) advanced (cryosparc.spec.BaseParam attribute) alloc_output() (cryosparc.job.ExternalJob method) allocate() (cryosparc.dataset.Dataset class method) append() (cryosparc.dataset.Dataset method) append_many() (cryosparc.dataset.Dataset class method) archived (cryosparc.spec.ProjectDocument attribute) AssetContentType (in module cryosparc.spec) AssetDetails (class in cryosparc.spec) AssetFormat (in module cryosparc.spec) B BaseParam (class in cryosparc.spec) BaseSchedulerTarget (class in cryosparc.spec) bopen() (in module cryosparc.util) C cache_path (cryosparc.spec.BaseSchedulerTarget attribute) cache_quota_mb (cryosparc.spec.BaseSchedulerTarget attribute) cache_reserve_mb (cryosparc.spec.BaseSchedulerTarget attribute) children (cryosparc.spec.JobDocument attribute) chunkSize (cryosparc.spec.AssetDetails attribute) clear() (cryosparc.job.Job method) cli (cryosparc.tools.CryoSPARC attribute) cols() (cryosparc.dataset.Dataset method) Column (class in cryosparc.column) CommandClient (class in cryosparc.command) CommandError common_fields() (cryosparc.dataset.Dataset class method) compressed_fields (cryosparc.dtype.DatasetHeader attribute) compression (cryosparc.dtype.DatasetHeader attribute) connect() (cryosparc.job.ExternalJob method) (cryosparc.job.Job method) Connection (class in cryosparc.spec) connections (cryosparc.spec.InputSlotGroup attribute) ConnectionSlot (class in cryosparc.spec) contains (cryosparc.spec.JobSection attribute) (cryosparc.spec.JobSpecSection attribute) (cryosparc.spec.OutputResultGroup attribute) contentType (cryosparc.spec.AssetDetails attribute) copy() (cryosparc.dataset.Dataset method) copy_fields() (cryosparc.dataset.Dataset method) count_max (cryosparc.spec.InputSlotGroup attribute) count_min (cryosparc.spec.InputSlotGroup attribute) cp() (cryosparc.job.Job method) (cryosparc.project.Project method) (cryosparc.tools.CryoSPARC method) CPU (cryosparc.spec.ResourceSlots attribute) create_external_job() (cryosparc.project.Project method) (cryosparc.tools.CryoSPARC method) (cryosparc.workspace.Workspace method) create_job() (cryosparc.project.Project method) (cryosparc.tools.CryoSPARC method) (cryosparc.workspace.Workspace method) create_workspace() (cryosparc.project.Project method) (cryosparc.tools.CryoSPARC method) created_at (cryosparc.spec.JobDocument attribute) (cryosparc.spec.ProjectDocument attribute) (cryosparc.spec.WorkspaceDocument attribute) created_by_user_id (cryosparc.spec.JobDocument attribute) (cryosparc.spec.WorkspaceDocument attribute) cryosparc module CryoSPARC (class in cryosparc.tools) cryosparc.column module cryosparc.command module cryosparc.dataset module cryosparc.dtype module cryosparc.errors module cryosparc.job module cryosparc.mrc module cryosparc.project module cryosparc.row module cryosparc.spec module cryosparc.star module cryosparc.tools module cryosparc.util module cryosparc.workspace module CSDAT_FORMAT (in module cryosparc.dataset) D Datafield (class in cryosparc.spec) Dataset (class in cryosparc.dataset) DatasetHeader (class in cryosparc.dtype) DatasetLoadError datatype (cryosparc.mrc.Header attribute) Datatype (in module cryosparc.spec) DEFAULT_FORMAT (in module cryosparc.dataset) default_rng() (in module cryosparc.util) deleted (cryosparc.spec.JobDocument attribute) (cryosparc.spec.ProjectDocument attribute) (cryosparc.spec.WorkspaceDocument attribute) desc (cryosparc.spec.BaseParam attribute) (cryosparc.spec.BaseSchedulerTarget attribute) (cryosparc.spec.ParamSection attribute) (cryosparc.spec.SchedulerLane attribute) descr() (cryosparc.dataset.Dataset method) description (cryosparc.spec.InputSlot attribute) (cryosparc.spec.InputSlotGroup attribute) (cryosparc.spec.JobDocument attribute) (cryosparc.spec.JobSection attribute) (cryosparc.spec.JobSpec attribute) (cryosparc.spec.JobSpecSection attribute) (cryosparc.spec.OutputResult attribute) (cryosparc.spec.OutputResultGroup attribute) (cryosparc.spec.ProjectDocument attribute) (cryosparc.spec.WorkspaceDocument attribute) detached (cryosparc.spec.ProjectDocument attribute) develop_only (cryosparc.spec.JobSpec attribute) dir() (cryosparc.job.Job method) (cryosparc.project.Project method) disconnect() (cryosparc.job.Job method) doc (cryosparc.job.ExternalJob attribute) (cryosparc.job.Job attribute) (cryosparc.project.Project attribute) (cryosparc.workspace.Workspace attribute) download() (cryosparc.job.Job method) (cryosparc.project.Project method) (cryosparc.tools.CryoSPARC method) download_asset() (cryosparc.job.Job method) (cryosparc.tools.CryoSPARC method) download_dataset() (cryosparc.job.Job method) (cryosparc.project.Project method) (cryosparc.tools.CryoSPARC method) download_file() (cryosparc.job.Job method) (cryosparc.project.Project method) (cryosparc.tools.CryoSPARC method) download_mrc() (cryosparc.job.Job method) (cryosparc.project.Project method) (cryosparc.tools.CryoSPARC method) downsample() (in module cryosparc.tools) drop_fields() (cryosparc.dataset.Dataset method) DT (class in cryosparc.mrc) dtype (cryosparc.dtype.DatasetHeader attribute) (cryosparc.spec.Datafield attribute) DType (in module cryosparc.dtype) E enum_dict (cryosparc.spec.EnumParam attribute) enum_keys (cryosparc.spec.EnumParam attribute) EnumParam (class in cryosparc.spec) Error (cryosparc.command.CommandClient attribute) EventLogAsset (class in cryosparc.spec) extend() (cryosparc.dataset.Dataset method) ExternalJob (class in cryosparc.job) ExternalJobError F Field (in module cryosparc.dtype) fields() (cryosparc.dataset.Dataset method) fileid (cryosparc.spec.EventLogAsset attribute) filename (cryosparc.spec.AssetDetails attribute) (cryosparc.spec.EventLogAsset attribute) filetype (cryosparc.spec.EventLogAsset attribute) filter_fields() (cryosparc.dataset.Dataset method) filter_prefix() (cryosparc.dataset.Dataset method) filter_prefixes() (cryosparc.dataset.Dataset method) find_external_job() (cryosparc.project.Project method) (cryosparc.tools.CryoSPARC method) find_job() (cryosparc.project.Project method) (cryosparc.tools.CryoSPARC method) find_project() (cryosparc.tools.CryoSPARC method) find_workspace() (cryosparc.project.Project method) (cryosparc.tools.CryoSPARC method) first() (in module cryosparc.util) FixedResourceSlots (class in cryosparc.spec) from_async_stream() (cryosparc.dataset.Dataset class method) G generate_intermediate_results_settings (cryosparc.spec.ProjectDocument attribute) generate_uids() (in module cryosparc.dataset) get_exposure_format() (in module cryosparc.tools) get_import_signatures() (in module cryosparc.tools) get_include() (in module cryosparc) get_job_sections() (cryosparc.tools.CryoSPARC method) get_job_specs() (cryosparc.tools.CryoSPARC method) get_lanes() (cryosparc.tools.CryoSPARC method) get_random_subset() (cryosparc.row.Spool method) get_targets() (cryosparc.tools.CryoSPARC method) Gpu (class in cryosparc.spec) GPU (cryosparc.spec.ResourceSlots attribute) gpus (cryosparc.spec.SchedulerTargetGpuNode attribute) group_name (cryosparc.spec.Connection attribute) (cryosparc.spec.ConnectionSlot attribute) (cryosparc.spec.OutputResult attribute) (cryosparc.spec.OutputResultGroupContains attribute) GROUP_NAME_PATTERN (in module cryosparc.job) H handle() (cryosparc.dataset.Dataset method) hashcache (class in cryosparc.util) Header (class in cryosparc.mrc) hidden (cryosparc.spec.BaseParam attribute) (cryosparc.spec.JobSpec attribute) (cryosparc.spec.ProjectDocument attribute) hostname (cryosparc.spec.BaseSchedulerTarget attribute) I id (cryosparc.spec.Gpu attribute) ImageContentType (in module cryosparc.spec) ImageFormat (in module cryosparc.spec) innerjoin() (cryosparc.dataset.Dataset method) innerjoin_many() (cryosparc.dataset.Dataset class method) input_slot_groups (cryosparc.spec.JobDocument attribute) (cryosparc.spec.JobSpec attribute) InputSlot (class in cryosparc.spec) InputSlotGroup (class in cryosparc.spec) inspect() (cryosparc.dataset.Dataset class method) interact() (cryosparc.job.Job method) interlace() (cryosparc.dataset.Dataset method) InvalidSlotsError is_equivalent() (cryosparc.dataset.Dataset method) is_interactive (cryosparc.spec.JobSpec attribute) is_lightweight (cryosparc.spec.JobSpec attribute) J Job (class in cryosparc.job) job_type (cryosparc.spec.JobDocument attribute) job_uid (cryosparc.spec.AssetDetails attribute) (cryosparc.spec.Connection attribute) (cryosparc.spec.ConnectionSlot attribute) JobDocument (class in cryosparc.spec) JobSection (class in cryosparc.spec) JobSpec (class in cryosparc.spec) JobSpecSection (class in cryosparc.spec) JobStatus (in module cryosparc.spec) K kill() (cryosparc.job.ExternalJob method) (cryosparc.job.Job method) L lane (cryosparc.spec.BaseSchedulerTarget attribute) last_accessed (cryosparc.spec.ProjectDocument attribute) length (cryosparc.dtype.DatasetHeader attribute) (cryosparc.spec.AssetDetails attribute) LICENSE_REGEX (in module cryosparc.tools) list_assets() (cryosparc.job.Job method) (cryosparc.tools.CryoSPARC method) list_files() (cryosparc.job.Job method) (cryosparc.project.Project method) (cryosparc.tools.CryoSPARC method) load() (cryosparc.dataset.Dataset class method) load_input() (cryosparc.job.Job method) load_output() (cryosparc.job.Job method) log() (cryosparc.job.Job method) log_checkpoint() (cryosparc.job.Job method) log_plot() (cryosparc.job.Job method) lowpass2() (in module cryosparc.tools) M make_batches() (cryosparc.row.Spool method) make_json_request() (in module cryosparc.command) make_request() (in module cryosparc.command) mask() (cryosparc.dataset.Dataset method) md5 (cryosparc.spec.AssetDetails attribute) mem (cryosparc.spec.Gpu attribute) metafiles (cryosparc.spec.OutputResult attribute) min_fields (cryosparc.spec.OutputResult attribute) mkdir() (cryosparc.job.Job method) (cryosparc.project.Project method) (cryosparc.tools.CryoSPARC method) module cryosparc cryosparc.column cryosparc.command cryosparc.dataset cryosparc.dtype cryosparc.errors cryosparc.job cryosparc.mrc cryosparc.project cryosparc.row cryosparc.spec cryosparc.star cryosparc.tools cryosparc.util cryosparc.workspace monitor_port (cryosparc.spec.SchedulerTargetNode attribute) N name (cryosparc.spec.BaseSchedulerTarget attribute) (cryosparc.spec.Gpu attribute) (cryosparc.spec.InputSlot attribute) (cryosparc.spec.InputSlotGroup attribute) (cryosparc.spec.JobSection attribute) (cryosparc.spec.JobSpec attribute) (cryosparc.spec.JobSpecSection attribute) (cryosparc.spec.OutputResult attribute) (cryosparc.spec.OutputResultGroup attribute) (cryosparc.spec.OutputResultGroupContains attribute) (cryosparc.spec.ProjectLastAccessed attribute) (cryosparc.spec.SchedulerLane attribute) NEWEST_FORMAT (in module cryosparc.dataset) noopcontext() (in module cryosparc.util) nsymbt (cryosparc.mrc.Header attribute) num_items (cryosparc.spec.OutputResult attribute) (cryosparc.spec.OutputResultGroup attribute) NUMPY_FORMAT (in module cryosparc.dataset) nx (cryosparc.mrc.Header attribute) ny (cryosparc.mrc.Header attribute) nz (cryosparc.mrc.Header attribute) O OpenBinaryMode (in module cryosparc.util) OpenTextMode (in module cryosparc.util) optional (cryosparc.spec.InputSlot attribute) order (cryosparc.spec.BaseParam attribute) (cryosparc.spec.ParamSection attribute) origin (cryosparc.mrc.Header attribute) output_result_groups (cryosparc.spec.JobDocument attribute) output_results (cryosparc.spec.JobDocument attribute) OutputResult (class in cryosparc.spec) OutputResultGroup (class in cryosparc.spec) OutputResultGroupContains (class in cryosparc.spec) owner_user_id (cryosparc.spec.ProjectDocument attribute) P padarray() (in module cryosparc.util) Param (class in cryosparc.spec) params_base (cryosparc.spec.JobDocument attribute) (cryosparc.spec.JobSpec attribute) params_secs (cryosparc.spec.JobDocument attribute) (cryosparc.spec.JobSpec attribute) params_spec (cryosparc.spec.JobDocument attribute) ParamSection (class in cryosparc.spec) ParamSpec (class in cryosparc.spec) parents (cryosparc.spec.JobDocument attribute) passthrough (cryosparc.spec.OutputResult attribute) (cryosparc.spec.OutputResultGroup attribute) (cryosparc.spec.OutputResultGroupContains attribute) path_dir_allowed (cryosparc.spec.PathParam attribute) path_file_allowed (cryosparc.spec.PathParam attribute) path_glob_allowed (cryosparc.spec.PathParam attribute) PathParam (class in cryosparc.spec) prefix (cryosparc.spec.Datafield attribute) prefixes() (cryosparc.dataset.Dataset method) print_input_spec() (cryosparc.job.Job method) print_job_types() (cryosparc.tools.CryoSPARC method) print_output_spec() (cryosparc.job.Job method) print_param_spec() (cryosparc.job.Job method) print_table() (in module cryosparc.util) Project (class in cryosparc.project) project_dir (cryosparc.spec.ProjectDocument attribute) project_params_pdef (cryosparc.spec.ProjectDocument attribute) project_stats (cryosparc.spec.ProjectDocument attribute) project_uid (cryosparc.job.ExternalJob attribute) (cryosparc.job.Job attribute) (cryosparc.spec.AssetDetails attribute) (cryosparc.spec.JobDocument attribute) (cryosparc.spec.WorkspaceDocument attribute) (cryosparc.workspace.Workspace attribute) project_uid_num (cryosparc.spec.JobDocument attribute) (cryosparc.spec.WorkspaceDocument attribute) ProjectDocument (class in cryosparc.spec) ProjectLastAccessed (class in cryosparc.spec) Q qdel_cmd_tpl (cryosparc.spec.SchedulerTargetCluster attribute) qinfo_cmd_tpl (cryosparc.spec.SchedulerTargetCluster attribute) qstat_cmd_tpl (cryosparc.spec.SchedulerTargetCluster attribute) qsub_cmd_tpl (cryosparc.spec.SchedulerTargetCluster attribute) query() (cryosparc.dataset.Dataset method) query_mask() (cryosparc.dataset.Dataset method) queue() (cryosparc.job.ExternalJob method) (cryosparc.job.Job method) R R (class in cryosparc.row) RAM (cryosparc.spec.ResourceSlots attribute) random_integers() (in module cryosparc.util) read() (in module cryosparc.mrc) (in module cryosparc.star) reassign_uids() (cryosparc.dataset.Dataset method) refresh() (cryosparc.job.Job method) (cryosparc.project.Project method) (cryosparc.workspace.Workspace method) rename_field() (cryosparc.dataset.Dataset method) rename_fields() (cryosparc.dataset.Dataset method) rename_prefix() (cryosparc.dataset.Dataset method) repeat_allowed (cryosparc.spec.InputSlotGroup attribute) replace() (cryosparc.dataset.Dataset method) required (cryosparc.spec.Datafield attribute) resource_fixed (cryosparc.spec.SchedulerTargetNode attribute) resource_slots (cryosparc.spec.SchedulerTargetNode attribute) ResourceSlots (class in cryosparc.spec) Result (in module cryosparc.util) result_name (cryosparc.spec.ConnectionSlot attribute) result_type (cryosparc.spec.ConnectionSlot attribute) Row (class in cryosparc.row) rows() (cryosparc.dataset.Dataset method) rtp (cryosparc.tools.CryoSPARC attribute) run() (cryosparc.job.ExternalJob method) S save() (cryosparc.dataset.Dataset method) save_external_result() (cryosparc.project.Project method) (cryosparc.tools.CryoSPARC method) (cryosparc.workspace.Workspace method) save_output() (cryosparc.job.ExternalJob method) SchedulerLane (class in cryosparc.spec) SchedulerTarget (in module cryosparc.spec) SchedulerTargetCluster (class in cryosparc.spec) SchedulerTargetGpuNode (class in cryosparc.spec) SchedulerTargetNode (class in cryosparc.spec) script_tpl (cryosparc.spec.SchedulerTargetCluster attribute) section (cryosparc.spec.BaseParam attribute) send_cmd_tpl (cryosparc.spec.SchedulerTargetCluster attribute) service (cryosparc.command.CommandClient attribute) set_default_random() (cryosparc.row.Spool class method) set_param() (cryosparc.job.Job method) set_random() (cryosparc.row.Spool method) setup_spooling() (cryosparc.row.Spool method) Shape (in module cryosparc.dtype) shorttitle (cryosparc.spec.JobSpec attribute) size (cryosparc.spec.ProjectDocument attribute) slice() (cryosparc.dataset.Dataset method) slot_name (cryosparc.spec.ConnectionSlot attribute) slots (cryosparc.spec.Connection attribute) (cryosparc.spec.InputSlotGroup attribute) SlotSpec (in module cryosparc.spec) split() (cryosparc.row.Spool method) split_by() (cryosparc.dataset.Dataset method) (cryosparc.row.Spool method) split_by_splits() (cryosparc.row.Spool method) split_from_field() (cryosparc.row.Spool method) split_half_in_order() (cryosparc.row.Spool method) split_into_quarter() (cryosparc.row.Spool method) Spool (class in cryosparc.row) spool() (cryosparc.row.Spool method) SSD (cryosparc.spec.FixedResourceSlots attribute) ssh_str (cryosparc.spec.SchedulerTargetNode attribute) start() (cryosparc.job.ExternalJob method) status (cryosparc.job.Job property) (cryosparc.spec.JobDocument attribute) stop() (cryosparc.job.ExternalJob method) strbytelen() (in module cryosparc.util) stream() (cryosparc.dataset.Dataset method) strencodenull() (in module cryosparc.util) subprocess() (cryosparc.job.Job method) subset() (cryosparc.dataset.Dataset method) summary (cryosparc.spec.OutputResultGroup attribute) SUPPORTED_EXPOSURE_FORMATS (in module cryosparc.tools) symlink() (cryosparc.job.Job method) (cryosparc.project.Project method) (cryosparc.tools.CryoSPARC method) T take() (cryosparc.dataset.Dataset method) test_connection() (cryosparc.tools.CryoSPARC method) TextContentType (in module cryosparc.spec) TextFormat (in module cryosparc.spec) title (cryosparc.spec.BaseParam attribute) (cryosparc.spec.BaseSchedulerTarget attribute) (cryosparc.spec.InputSlot attribute) (cryosparc.spec.InputSlotGroup attribute) (cryosparc.spec.JobDocument attribute) (cryosparc.spec.JobSection attribute) (cryosparc.spec.JobSpec attribute) (cryosparc.spec.JobSpecSection attribute) (cryosparc.spec.OutputResult attribute) (cryosparc.spec.OutputResultGroup attribute) (cryosparc.spec.ParamSection attribute) (cryosparc.spec.ProjectDocument attribute) (cryosparc.spec.SchedulerLane attribute) (cryosparc.spec.WorkspaceDocument attribute) to_cstrs() (cryosparc.dataset.Dataset method) to_fixed() (cryosparc.column.Column method) to_list() (cryosparc.dataset.Dataset method) (cryosparc.row.Row method) to_pystrs() (cryosparc.dataset.Dataset method) to_records() (cryosparc.dataset.Dataset method) topen() (in module cryosparc.util) trimarray() (in module cryosparc.util) type (cryosparc.job.Job property) (cryosparc.spec.EnumParam attribute) (cryosparc.spec.InputSlot attribute) (cryosparc.spec.InputSlotGroup attribute) (cryosparc.spec.JobDocument attribute) (cryosparc.spec.OutputResult attribute) (cryosparc.spec.OutputResultGroup attribute) (cryosparc.spec.OutputResultGroupContains attribute) (cryosparc.spec.Param attribute) (cryosparc.spec.SchedulerLane attribute) (cryosparc.spec.SchedulerTargetCluster attribute) (cryosparc.spec.SchedulerTargetNode attribute) U u32bytesle() (in module cryosparc.util) u32intle() (in module cryosparc.util) uid (cryosparc.job.ExternalJob attribute) (cryosparc.job.Job attribute) (cryosparc.project.Project attribute) (cryosparc.spec.JobDocument attribute) (cryosparc.spec.OutputResult attribute) (cryosparc.spec.OutputResultGroup attribute) (cryosparc.spec.OutputResultGroupContains attribute) (cryosparc.spec.ProjectDocument attribute) (cryosparc.spec.WorkspaceDocument attribute) (cryosparc.workspace.Workspace attribute) uid_num (cryosparc.spec.JobDocument attribute) (cryosparc.spec.ProjectDocument attribute) (cryosparc.spec.WorkspaceDocument attribute) union() (cryosparc.dataset.Dataset method) union_many() (cryosparc.dataset.Dataset class method) upload() (cryosparc.job.Job method) (cryosparc.project.Project method) (cryosparc.tools.CryoSPARC method) upload_asset() (cryosparc.job.Job method) upload_dataset() (cryosparc.job.Job method) (cryosparc.project.Project method) (cryosparc.tools.CryoSPARC method) upload_mrc() (cryosparc.job.Job method) (cryosparc.project.Project method) (cryosparc.tools.CryoSPARC method) upload_plot() (cryosparc.job.Job method) uploadDate (cryosparc.spec.AssetDetails attribute) user_id (cryosparc.tools.CryoSPARC attribute) users_with_access (cryosparc.spec.ProjectDocument attribute) V value (cryosparc.spec.BaseParam attribute) (cryosparc.spec.ParamSpec attribute) version (cryosparc.spec.ConnectionSlot attribute) VERSION_REGEX (in module cryosparc.tools) versions (cryosparc.spec.OutputResult attribute) vis (cryosparc.tools.CryoSPARC attribute) VOXEL_TYPES (in module cryosparc.mrc) W wait_for_done() (cryosparc.job.Job method) wait_for_status() (cryosparc.job.Job method) worker_bin_path (cryosparc.spec.BaseSchedulerTarget attribute) Workspace (class in cryosparc.workspace) workspace_type (cryosparc.spec.WorkspaceDocument attribute) workspace_uids (cryosparc.spec.JobDocument attribute) WorkspaceDocument (class in cryosparc.spec) write() (in module cryosparc.mrc) (in module cryosparc.star) write_blocks() (in module cryosparc.star) X xlen (cryosparc.mrc.Header attribute) Y ylen (cryosparc.mrc.Header attribute) Z zlen (cryosparc.mrc.Header attribute)
